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Publications 2020

Peng Zhang, Xiao-Ou Zhang, Tingting Jiang, Lingling Cai, Xiao Huang, Qi Liu, Dan Li, Aiping Lu, Yan Liu, Wen Xue, Peng Zhang, Zhiping Weng.  Comprehensive identification of alternative back-splicing in human tissue transcriptomes. 
Nucleic Acids Research, Volume 48, Issue 4, 28 February 2020, Pages 1779 – 1789, 4 
PMCID: PMC7038940.

Parhad SS, Yu T, Zhang G, Rice NP, Weng Z, Theurkauf WE.
Adaptive Evolution Targets a piRNA Precursor Transcription Network. 
Cell Rep. 2020 Feb 25;30(8):2672-2685.e5. doi: 10.1016/j.celrep.2020.01.109. PubMed PMID: 32101744; PubMed Central PMCID: PMC7061269. 

Vangaveti S, Vreven T, Zhang Y, Weng Z.
Integrating ab initio and template-based algorithms for protein-protein complex structure prediction. 
Bioinformatics. 2020 Feb 1;36(3):751-757. doi: 10.1093/bioinformatics/btz623. PubMed PMID: 31393558. 

Moore JE, Pratt HE, Purcaro MJ, Weng Z. 
A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods. 
Genome Biol. 2020 Jan 22;21(1):17. doi: 10.1186/s13059-019-1924-8. PubMed PMID: 31969180; PubMed Central PMCID: PMC6977301

Kwan SY, Sheel A, Song CQ, Zhang XO, Jiang T, Dang H, Cao Y, Ozata DM, Mou H, Yin H, Weng Z, Wang XW, Xue W. 
Depletion of TRRAP Induces p53-Independent Senescence in Liver Cancer by Down-Regulating Mitotic Genes
Hepatology. 2020 Jan;71(1):275-290. doi: 10.1002/hep.30807. Epub 2019 Aug 11. PubMed PMID: 31188495; PubMed Central PMCID: PMC6906267.

Moore JE, Pratt HE, Purcaro MJ, Weng Z. 
A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods. 
Genome Biol. 2020 Jan 22;21(1):17. doi: 10.1186/s13059-019-1924-8. PubMed PMID: 31969180; PubMed Central PMCID: PMC6977301.